alphafold structure prediction software package Search Results


3431-005-02  (Bio-Techne corporation)
90
Bio-Techne corporation 3431-005-02
3431 005 02, supplied by Bio-Techne corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/3431-005-02/product/Bio-Techne corporation
Average 90 stars, based on 1 article reviews
3431-005-02 - by Bioz Stars, 2026-04
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graphpad prism 8  (GraphPad Software Inc)
90
GraphPad Software Inc graphpad prism 8
Graphpad Prism 8, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/graphpad prism 8/product/GraphPad Software Inc
Average 90 stars, based on 1 article reviews
graphpad prism 8 - by Bioz Stars, 2026-04
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alphafold 2  (DNASTAR)
95
DNASTAR alphafold 2
Alphafold 2, supplied by DNASTAR, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/alphafold 2/product/DNASTAR
Average 95 stars, based on 1 article reviews
alphafold 2 - by Bioz Stars, 2026-04
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alphafold2 software  (Deepmind Technologies Ltd)
90
Deepmind Technologies Ltd alphafold2 software
Computed structure of nsp3C (full sequence, 722 residues, E1224-G1945). (A) Model of nsp3C monomer computed using <t>AlphaFold2</t> machine learning. The four conserved cysteine residues present in the 3Ecto domain of nsp3C are depicted as orange spheres. The Y domains (Y2–Y4) forming the Y-CoV shape are indicated, following boundaries recently published (7). (B) Confidence in the prediction of five models is given by plDDT values per residue position. Values above 90 indicate high accuracy, while pLDDT scores below 50 indicate low confidence (51).
Alphafold2 Software, supplied by Deepmind Technologies Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/alphafold2 software/product/Deepmind Technologies Ltd
Average 90 stars, based on 1 article reviews
alphafold2 software - by Bioz Stars, 2026-04
90/100 stars
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cryosparc v4  (Structura Biotechnology Inc)
90
Structura Biotechnology Inc cryosparc v4
Computed structure of nsp3C (full sequence, 722 residues, E1224-G1945). (A) Model of nsp3C monomer computed using <t>AlphaFold2</t> machine learning. The four conserved cysteine residues present in the 3Ecto domain of nsp3C are depicted as orange spheres. The Y domains (Y2–Y4) forming the Y-CoV shape are indicated, following boundaries recently published (7). (B) Confidence in the prediction of five models is given by plDDT values per residue position. Values above 90 indicate high accuracy, while pLDDT scores below 50 indicate low confidence (51).
Cryosparc V4, supplied by Structura Biotechnology Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/cryosparc v4/product/Structura Biotechnology Inc
Average 90 stars, based on 1 article reviews
cryosparc v4 - by Bioz Stars, 2026-04
90/100 stars
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Image Search Results


Computed structure of nsp3C (full sequence, 722 residues, E1224-G1945). (A) Model of nsp3C monomer computed using AlphaFold2 machine learning. The four conserved cysteine residues present in the 3Ecto domain of nsp3C are depicted as orange spheres. The Y domains (Y2–Y4) forming the Y-CoV shape are indicated, following boundaries recently published (7). (B) Confidence in the prediction of five models is given by plDDT values per residue position. Values above 90 indicate high accuracy, while pLDDT scores below 50 indicate low confidence (51).

Journal: Journal of Virology

Article Title: Oligomeric assembly of the C-terminal and transmembrane region of SARS-CoV-2 nsp3

doi: 10.1128/jvi.01575-23

Figure Lengend Snippet: Computed structure of nsp3C (full sequence, 722 residues, E1224-G1945). (A) Model of nsp3C monomer computed using AlphaFold2 machine learning. The four conserved cysteine residues present in the 3Ecto domain of nsp3C are depicted as orange spheres. The Y domains (Y2–Y4) forming the Y-CoV shape are indicated, following boundaries recently published (7). (B) Confidence in the prediction of five models is given by plDDT values per residue position. Values above 90 indicate high accuracy, while pLDDT scores below 50 indicate low confidence (51).

Article Snippet: Predicted structural models using AlphaFold2 software In the early 2020s, DeepMind revolutionized the world of structural biology by announcing that its AlphaFold machine-learning method system had significantly outperformed all other methods in the biennial Critical Assessment of Protein Structure Prediction (CASP) and by making an unprecedented number of human and SARS-CoV-2 non-membrane protein structure models available to the community ( 48 , 49 ).

Techniques: Sequencing, Residue

Predicted hexameric structure of nsp3C (truncated version, P1558-G1945). (A) AlphaFold2 model of the hexameric assembly. The six protomers are highlighted with different colors. Three views (top, side, bottom) indicate dimensions of the nsp3C hexamer. (B) Surface electrostatic representation of the hexamer model. Same orientation as in (A). Negative and positive charges are colored red and blue, respectively. (C) Hydrophobic representation of the hexamer model. (D) Left, model of a protomer with the Y1–Y4 domains highlighted in different colors. The helical part that precedes the Y1 domain is the C-terminal segment of the AH1 domain (pink). Right, the model (cyan) is superimposed onto the recently solved crystal structure of the CoV-Y domain (pink) (7).

Journal: Journal of Virology

Article Title: Oligomeric assembly of the C-terminal and transmembrane region of SARS-CoV-2 nsp3

doi: 10.1128/jvi.01575-23

Figure Lengend Snippet: Predicted hexameric structure of nsp3C (truncated version, P1558-G1945). (A) AlphaFold2 model of the hexameric assembly. The six protomers are highlighted with different colors. Three views (top, side, bottom) indicate dimensions of the nsp3C hexamer. (B) Surface electrostatic representation of the hexamer model. Same orientation as in (A). Negative and positive charges are colored red and blue, respectively. (C) Hydrophobic representation of the hexamer model. (D) Left, model of a protomer with the Y1–Y4 domains highlighted in different colors. The helical part that precedes the Y1 domain is the C-terminal segment of the AH1 domain (pink). Right, the model (cyan) is superimposed onto the recently solved crystal structure of the CoV-Y domain (pink) (7).

Article Snippet: Predicted structural models using AlphaFold2 software In the early 2020s, DeepMind revolutionized the world of structural biology by announcing that its AlphaFold machine-learning method system had significantly outperformed all other methods in the biennial Critical Assessment of Protein Structure Prediction (CASP) and by making an unprecedented number of human and SARS-CoV-2 non-membrane protein structure models available to the community ( 48 , 49 ).

Techniques: